Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015919589.1_cds_XP_016468783.1_61385
CDS Infomation

[gene=LOC107791269] [db_xref=GeneID:107791269] [protein=protein ROOT HAIR DEFECTIVE 3-like isoform X1] [protein_id=XP_016468783.1] [location=join(25700..25703,27752..27901,28109..28175,28254..28356,28834..28904,29005..29068,29135..29200,29322..29369,29452..29514,29609..29665,29880..30038,30123..30191,30300..30391,30743..30821,31564..31729,32236..32360,32657..32919,33005..33101,33193..33348,33877..34008)] [gbkey=CDS]
Sequence

ATGGATAAAAGTGATGGATGTTGTTCCACACACCTCATTGATGGGGATGGGGTCTTCAAT
GTTGCTGGAGTTGAAAATTTCATAAAGGAAGTTAAACTGGCAGAATGTGGTCTTTCATAT
GCTATAGTATCCATTATGGGTCCACAAAGTAGTGGGAAAAGTACACTGTTAAATCATCTA
TTTGGTACTAACTTTAGAGAGATGGATGCTTATAAAGGAAGGTCACAAACCACAAAAGGT
ATCTGGATGGCTCGATGTGTTGGGATTGAGCCGTGCACCCTTGTTATGGATTTAGAGGGC
ACCGATGGGAGAGAGCGTGGAGAGGATGACACTACATTTGAGAAGCAAAGTGCCCTATTT
GCCCTTGCTGTTTCTGATATAGTGCTAATCAATATGTGGTGTCATGATATTGGCCGTGAG
CAAGCTGCTAATAAGCCTCTTCTGAAGACTGTCTTTCAGGTTATGATGCGGTTATTTAGC
CCTCGTAAAACGACATTGATGTTTGTTATACGCGATAAAACAAGGACTCCGCTTGAAAAT
TTGGAGCCTGTTTTAAGGGAAGACATTCAGAAGATATGGGATTCCGTCCCAAAGCCGCAA
GCTCATGCGGAAACACCTTTAGGTGAATTTTTTAATGTTGAGGTTGTTGCACTTTCTAGT
TATGAAGAGAAGGAAGAGCAATTTAAAGAGCAGGTGGCTAGTCTAAGACAGCGATTCTTT
CATTCTATTGCACCTGGGGGTCTTGCTGGAGATAGGCGGGGAGTTGTTCCTGCTTCTGGT
TTTTCGTTTAGTGCACAGCATATGTGGGAGGTTATAAAGGAGAACAGGGACCTTGACCTC
CCTGCCCATAAGGTTATGGTAGCTACCGTACGCTGTGAAGAAATTGCCCATGAAAAATAT
GACTCTTTCACTGCAAATGAGGAGTGGTGTCAATTAAAAGAGGCAGTGCAATCTCATCCT
GTGGGTGGCTTCGGGAAGAAGCTTAGCACAATTTTGAACACTTGTTTATCAGAATATGAT
GCAGAGGCTACATTCTTTGATGAAGGAGTGAGATCTACAAAACGAAAGCAGTTGGAAGAG
AAATTGCTTCAGTTTGTCCAACCAGCCTACCAATCTATGCTGGGACGCATACGATCTGAT
ACTTTGGAAAGATTCAAAGAAGCATTTGATAAGGAACTGAAGGGAGGTATAGGGTTTGCA
ATGGCCGCTCATGAGTGCACTGTGTCTTTTATGTCCCAGTTTGATGAGGAATGCGCAGAT
GCTGTTATTGATCAAGCAAAATGGGACTCATCCAGAGTTAGGGATAAGCTCAAGCGTGAT
GTAGATGCTCATATTTCCGAAATTCGTACTGCCAAGCTGGCTGAAGTTACTACTCTTTAC
GAGACCAAATTAAATGATGCTTTAGCTGGACCTGTGGAGGGTCTTTTAGATGGAGCTGCT
GATGATACATGGCCAGCAATAAGAAAACTGCTTCAGCGTGAGACTGACACAGCACTCTCT
GGGTTTTCGGCTGCACTTTCTGGTTTTGAAATGGATGAACAAACAAGGGAAAATATGGTT
TTGAGATTGAAGGATTATGCACGCGGAGTGGTTGAAGCAAAGGCGAAGGAAGAGGCTGGA
AGGGTTTTGATTCGTATGAAGGACAGGTTTTCAATGTTATTTAGCTATGATTCTGATTCA
ATGCCACGAGTTTGGATTGGAAAGGAAAATATTCGAGCTATTACCAAAACTGCCAGATCA
GCTTCTCTGAAGCTCCTGTCAGTTATGGCTGCAATTCGTTTGGAAGATGAACGTGATAGC
ATAGAGAATACACTCACTATTGCTCTTTCGGATGGAGGTGCTTCAACCAAAAAAGGCATT
GCATCTCTTGATCCTCTGGCCTCTAGCACTTGGAATGAGGTCTCTGCATCAAAAACTTTA
ATCACACCTATCCAATGCAAGTCGTTGTGGAAGCAATTTAACACTGAGACTGAATACATT
GTTACACAAGCCATTGCTGCTCAGGCACGTTATCTTACATCTTGCACATAA

Peptide Sequence

PEP ID

XP_016468783.1
PEP Infomation

PREDICTED: protein ROOT HAIR DEFECTIVE 3-like isoform X1 [Nicotiana tabacum]
Sequence

MDKSDGCCSTHLIDGDGVFNVAGVENFIKEVKLAECGLSYAIVSIMGPQSSGKSTLLNHL
FGTNFREMDAYKGRSQTTKGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTTFEKQSALF
ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN
LEPVLREDIQKIWDSVPKPQAHAETPLGEFFNVEVVALSSYEEKEEQFKEQVASLRQRFF
HSIAPGGLAGDRRGVVPASGFSFSAQHMWEVIKENRDLDLPAHKVMVATVRCEEIAHEKY
DSFTANEEWCQLKEAVQSHPVGGFGKKLSTILNTCLSEYDAEATFFDEGVRSTKRKQLEE
KLLQFVQPAYQSMLGRIRSDTLERFKEAFDKELKGGIGFAMAAHECTVSFMSQFDEECAD
AVIDQAKWDSSRVRDKLKRDVDAHISEIRTAKLAEVTTLYETKLNDALAGPVEGLLDGAA
DDTWPAIRKLLQRETDTALSGFSAALSGFEMDEQTRENMVLRLKDYARGVVEAKAKEEAG
RVLIRMKDRFSMLFSYDSDSMPRVWIGKENIRAITKTARSASLKLLSVMAAIRLEDERDS
IENTLTIALSDGGASTKKGIASLDPLASSTWNEVSASKTLITPIQCKSLWKQFNTETEYI
VTQAIAAQARYLTSCT

Transcript Sequence

Gene sequence data has not been registered.